2024

  • Burns, J., Becker, K., Casagrande, D., Daniels, J., Roberts, P., Orenstein, E., et al. (2024). An in situ digital synthesis strategy for the discovery and description of ocean live. Science Advances, 10(3), doi: 10.1126/sciadv.adj4960. [This article has been published as OPEN ACCESS].

  • Final Expedition Report: Deep Coral Diversity at Emperor Seamount Chain 2019

  • 2023

  • Breusing, C., Xiao, Y., Russel, S., Corbett-Detig, R., Li, S., Sun, J., et al. (2023). Ecological differences among hydrothermal vent symbioses may drive contrasting patterns of symbiont population differentiation. mSystems 8(4), doi: 10.1128/msystems.00284-23.  [This article has been published as OPEN ACCESS].

  • Carmignani, A., Radice, V., McMahon, K., Holman, A., Miller, K., Grice, K., and Richards, Z. (2023). Levels of autrophy and heterotrophy in mesophotic corals near the end photic zone. Frontiers in Marine Science, 10, doi: 10.3389/fmars.2023.1089746. [This article has been published as OPEN ACCESS, with support from SOI].

  • Chen, C., Jamieson, J., and Tunnicliffe, V. (2023). Hydrothermal vent fauna of the Galapagos Rift: Updated species list with new records. BioRxiv, preprint, doi: 10.1101/2023.11.28.568903. [This preprint article has been published as OPEN ACCESS].

  • Ekins, M., and Hooper, J. (2023). New carnivorous sponges from the Great Barrier Reef, Queensland, Australia collected by ROV from the RV FALKOR. Zootaxa, doi: 10.11646/zootaxa.5293.3.2.

  • Estapa, M., Durkin, C., Slade, W., Huffard, C., O’Neill, S., and Omand, M. (2023). A new, global optical sediment trap calibration. LImnol. Oceanogr. Methods. doi: 10.1002/lom3.10592. [This article has been published OPEN ACCESS].

  • Final Expedition Report: Designing the Future 2

  • Final Expedition Report: Interdisciplinary Investigation of the Pescadero Basin

  • Final Expedition Report: Studying the Sea Surface Microlayer 2

  • Frable, B., Seid, C., Bronson, A., and Rask Moller, P. (2023). A new deep-sea eelpout of the genus Pyrolycus (Teleostei: Zoarcidae) associated with a hydrothermal seep on the Pacific margin of Costa Rica. Zootaxa 5230 (1), doi: 10.11646/zootaxa.5230.1.5. [This article is published as OPEN ACCESS].

  • Grassian, B., Roman, C., Warren, J., Casagrande, D., (2023). High-resolution measurements of the epipelagic and mesopelagic ocean by a profiling vehicle equipped with environmental sensors and a broadband echosounder. Limnol Oceanogr Methods, 21:106-125. doi: 10.1002/lom3.10532.

  • Hauer, M., Breusing, C., Termbath-Reichert, E., Huber, J., and Beinart, R. (2023). Geography, not lifestyle, explains the population structure of free-living and host-associated deep-sea hydrothermal vent snail symbionts. Microbiome, 11 (106), doi: 10.1186/s40168-023-01493-2. [This article has been published as OPEN ACCESS with support from SOI].

  • Huang, Z., Feng, M., Dalton, S., and Carroll, A. (2023). Marine heatwaves in the Great Barrier Reef and Coral Sea: their mechanisms and impacts on shallow and mesophotic coral ecosystems. Sci. of the Total Env. (908), doi: 10.1016/j.scitotenv.2023.168063. [This article has been published as OPEN ACCESS].

  • Kennedy, R. and Rotjan, R. (2023). Mind the gap: comparing exploration effort with global biodiversity patterns and climate projects to determine ocean areas with greatest exploration needs. Front. Mar. Sci. (10). doi: 10.3389/fmars.2023.1219799. [This article has been published as OPEN ACCESS].

  • Klymak, J., Allen, S., and Waterman, S. (2023). Separation of an Upwelling Current Bounding the Juan de Fuca Eddy. JGR Oceans, 128 (8), doi: 10.1029/2023JC019688. [This article has been published OPEN ACCESS].

  • Laso-Pérez, R., Wu, F., Crémière, A., Speth, D., Magyar, J., Zhao, K., et al. (2023). Evolutionary diversification of methanotrophic ANME-1 archaea and their expansive virome. Nature Microbiology, doi: 10.1038/s41564-022-01297-4. [This article has been published as OPEN ACCESS].

  • Lindsay, D., Grossman, M., Montenegro, J., and Carrara Morandini, A. (2023). A new subfamily of ulmarid scyphomedusae, the Santjordiinae, with a description of Santjordia pagesi gen. et sp. nov. (Cnidaria: Scyphozoa: Discomedusae: Semaeostomeae: Ulmaridae) from the Sumusu Caldera, Ogasawara Islands, Japan. Zootaxa, 5374 (4), doi: 10.11646/zootaxa.5374.4.5. [This articel has been published as OPEN ACCESS].

  • Mah, C. (2023). A new species of Astrosarkus from Western Australia including new Mesophotic occurrences of Indian Ocean Oreasteridae (Valvatida, Asteroidea). Memoirs of Museum Victoria 82:143-165, doi: 10.24199/j.mmv.2023.82.08. [This article has been published as OPEN ACCESS].

  • Matek, A., Bosak, S., Supraha, L., Neeley, A., Visic, H., Cetinic, I. and Ljubesic, Z. (2023). Phytoplankton diversity and chemotaxonomy in contrasting North Pacific ecoystems. PeerJ 11, doi: 10.7717/peerj.14501. [This article has been published as OPEN ACCESS].

  • McCowin, M., Collins, P., and Rouse, G. (2023). Updated phylogeny of Vestimentifera (Siboglinidae, Polychaeta, Annelida) based on mitochondrial genomes, with a new species. Molecular Phylogenetics and Evolution, 187. doi: 10.1016/j.ympev.2023.107872. [This article has been published as OPEN ACCESS].

  • Middleton, J., Paytan, A., Auro, M., Saito, M., and Horner, T. (2023). Barium isotope signatures of barite-fluid ion exchange in Equatorial Pacific sediments. Earth and Planetary Sci. Letters (612), doi: 10.1016/j.epsl.2023.118150.

  • Moggioli, G., Panossian, B., Sun, Y., Thiel, D., Martin-Zamora, F., Tran, M., et al. (2023). Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelida worms. Nature Communications, 14 (2814), doi: s41469-023-38521-6. [This article is published as OPEN ACCES.]

  • Mongiardino Koch, N., Tilic, E., Miller, A.K., Stiller, J., and Rouse, G. (2023). Confusion will be my epitaph: genome-scale discordance stifles phylogenetic resolution of Holothuroidea. Proceedings of the Royal Society, 290, doi: 10.1098/rspb.2023.0988. [This article has been published as OPEN ACCESS].

  • Paoletti, M., Fournier, G., Dolan, E., and Saito, M. (2023). Metaproteogenomic Profile of a Mesopelagic Adenylylsulfate Reductase: Course-Based Discovery Using the Ocean Protein Portal. J. Proteome Res. 22(9), doi: 10.1021/acs.jproteome.3c00152. [This article has been published as OPEN ACCESS].

  • Peña-Montenegro, T., Kleindienst, S., Allen, A., Murat Eren, A., McCrow, J., Sánchez-Calderón, J., et al. (2023). Species-specific responses of marine bacteria to envrionmental perturbation. ISME Communications, 3 (99). doi: 10.1038/s43705-023-00310-z. [The article has been published OPEN ACCESS with support from SOI].

  • Rodriguez-Flores, P., Seid, C., Rouse, G., and Giribet, G. (2023). Cosmopolitan abyssal lineages? A systematic study of East Pacific deep-sea squat lobsters (Decapoda: Galatheoidea Munidopsidae). Invertebrate Systematics, 37 (1), doi: 10.1071/IS22030. [This article has been published as OPEN ACCESS].

  • Schwarzhans, W., and Gerringer, M. (2023). Otoliths of the deepest-living fishes. Deep Sea Research Part I: Oceanographic Research Papers, 198, doi: 10.1016/j.dsr.2023.104079.

  • Stewart, A., Pietsch, T., Moore, J., Peng, X. (2023). Upside-down swimming: in situ observations of inverted orientation of Gigantiactis, with a new depth record for the Ceratioidei. Journal of Fish Biology, doi: 10.1111/jfb.15609.

  • Taviani, M., Foglini, F., Castellan, G., Montagna, P., McCulloch, M., and Trotter, J. (2023). First assessment of anthropogenic impacts in submarine canyon systems off southwestern Australia. Science of the Total Environment, 857 (1), doi: 10.1016/j.scitotenv.2022.159243. [This article has been published as OPEN ACCESS with support from SOI].

  • Vlach, D. (2023). An Illustrated Guide to the Southern California Borderland. California Digital Library, Retrieved from https://escholarship.org/uc/item/1hg7v0q0. [This guide has been published OPEN ACCESS].

  • Wickstein, M. and Conway, K. (2023). The Chirostyloidea of the Northeastern Pacific: Host Associations, Range Extensions and a New Species (Decapoda: Anomura). Zootaxa, 5284 (1), doi:10.11646/zootaxa.5284.1.7.

  • Zhang, D., Zhou, Y., Yen, N., Hiley, A., and Rouse, G. (2023). Ophryotrocha (Dorvilleidae, Polychaeta, Annelida) from deep-sea hydrothermal vents, with the description of five new species, Euoropean Journal of Taxonomy, 864 (1), doi: 10.5852/ejt.2023.864.2101. [This article has been published as OPEN ACCESS].

  • 2022

  • 30 day Preliminary Cruise Report: Interdisciplinary Investigation of the Pesacdero Basin

  • Alalykina, I. and Polyakova, N. (2022). New species of Ophryotrocha (Annelida: Dorvilleidae) Associated with Deep-sea Reducing Habitats in the Bering Sea, Northwest Pacific. Deep Sea Research Part II: Topical Studies in Oceanography, 206, doi: 10.1016/j.dsr2.2022.105217. (This publication describes a new species discovered on Falkor in 2018 and cites the respective DNA sequences). 

  • Beaman, R., Picard, K., and Miller, A. (2022). RV Falkor Surveys in Australia 2020-2021. Oral Presentation and Conference Paper, Hydrospatial 2021 Conference, Australasian Hydrographic Society, Cairns, Australia. [Abstract and presentation are OPEN ACCESS].

  • Blanton, J., Peoples, L., Gerringer, M., Iacuaniello, C., Gallo, N., Linley, T., et al. (2022). Microbiomes of Hadal Fishes across Trench Habitats Contain Similar Taxa and Known Piezophiles. mSphere, 7(2), doi: 10.1128/msphere.00032-22.  [This article is published as OPEN ACCESS].

  • Breusing, C., Castel, J., Yang, Y., Broquet, T., Sun, J., Jollivet, D., et al. (2022). Global 16S rRNA Diversity of Provannid Snail Endosymbionts from Indo-Pacific Deep-sea Hydrothermal Vents. Environmental Microbiology Reports, doi: 10.1111/1758-229.13051. [This article has been published as OPEN ACCESS with support from SOI].

  • Breusing, C., Genetti, M., Russel, S., Corbett-Detig, R., and Beinart, R. (2022). Horizontal Transmission Enables Flexible Associations with Locally Adapted Symbiont Straints in Deep-sea Hydrothermal Vent Symbioses, PNAS, 119 (14), doi: 10.1073/pnas.2115608119. [This article will be available OPEN ACCESS on June 1, 2022 with support from SOI].

  • Breusing, C., Hagen Klobusnik, N., Hauer, M., Beinart, R. (2022). Genome Assembly of the Chemosynthetic Endosymbiont of the Hydrothermal Vent Snail Aliviniconcha adamantis from the Mariana Arc. G3 (Bethesda), 12 (10), doi: 10.1093/g3journal/jkac220. [This article has been published as OPEN ACCESS].

  • Cinay, T., Dumit, D., Woosley, R., Boles, E., Kwiecinski, J., Mullen, S., et al. (2022). Coincident Biogenic Nitrate and pH Maxima Arise in the Upper Anoxic Layer in the Eastern Tropical North Pacific. Global Biogeochemical Cycles, doi: 10.1029/2022GB007470. [This article has been published as OPEN ACCESS].

  • Doan-Nhu, H., Nguyen, T-V., Hoang, D-H., Montoya, J., and Nguyen-Ngoc, L. (2022). Copepods key traits in diverse habitats of tropical waters. Journal of Plankton Research, 44 (1), doi: 10.1093/plankt/fbab088.

  • Durkin, C., Cetinić, I., Estapa, M., Ljubešić, Z., Mucko, J., Neeley, A., and Omand, M. (2022).  Tracing the Path of Carbon Export in the Ocean Through DNA Sequencing of Individual Sinking Particles, The ISME Journal, doi: 10.1038/s41396-022-01239-2. [This article has been published as OPEN ACCESS].

  • Etnoyer, P., Messing, C., Stanley, K., Baumiller, T., Lavelle, K., and Shirley, T. (2022). Diversity and Time-series Analyses of Caribbean deep-sea Coral and Sponge Assemblages on the Tropical Island Slope of Isla de Roatan, Honduras. Marine Biodiversity, 52(8), doi: 10.1007/s12526-021-01255-z. [This article has been published as OPEN ACCESS with support from SOI].

  • Final Project Report: Pinging in the New Year: Mapping the Tasman and Coral Seas

  • Final Project Report: Seafloor to Seabirds in the Coral Sea

  • Final Project Report: Seamounts, Canyons and Reefs of the Coral Sea

  • Holland, N., Hiley, A., and Rouse, G. (2022). A new species of deep-sea torquaratorid enteropneust (Hemichordata): A sequential hermaphrodite with exceptionally wide lips. Invertebrate Biology, doi: 10.111/ivb.12379. [This article is published as OPEN ACCESS with support from SOI].

  • Horowitz, J., Opresko, D., Molodtsova, T., Beaman, R., Cowman, P., and Bridge, T. (2022). Five new species of black coral (Anthozoa; Antipatharia) from the Great Barrier Reef and Coral Sea, Australia. Zootaxa, 5213 (1), doi: 10.1164/zootaxa.5213.1.1. [This article is published as OPEN ACCESS].

  • Hu, S., Smith, A., Anderson, R., Sylva, S., Setzer, M., Steadmon, M., et al. (2022). Globally-distributed Microbial Eukaryotes Exhibit Endemism at Deep-sea Hydrothermal vents. Molecular Ecology, doi: 10.1111/med.16745.