2024

  • Baker, I., and Girguis, P. (2024). Sulfur cycling likely obscures dynamic biologically-driven iron redox cycling in contemporary methane seep environments. Environmental microbiology reports, 16 (3), doi: 10.1111/1758-2229.13263. [This article has been published as OPEN ACCESS, with support from SOI].

  • Burns, J., Becker, K., Casagrande, D., Daniels, J., Roberts, P., Orenstein, E., et al. (2024). An in situ digital synthesis strategy for the discovery and description of ocean live. Science Advances, 10(3), doi: 10.1126/sciadv.adj4960. [This article has been published as OPEN ACCESS].

  • Burns, J., Daniels, J., Becker, K., Casagrande, D., Roberts, P., Orenstein, E., et al. (2024). Transcriptome sequencing of seven deep marine invertebrates. Nature Scientific Data, 11 (679), doi: 10.1038/s41597-024-03533-4. [This article has been published as OPEN ACCESS].

  • Horowitz, J., Opresko,D., Herrera, S., Hansel, C., Quattrini, A. (2024). Ameripathidae, a new family of antipatharian corals (Cnidaria, Anthozoa, Hexacorallia, Antipatharia). Zookeys, doi: 10.3897/zookeys.1203.121411. [This article has been published as OPEN ACCESS, with support from SOI].

  • Julià-Miralles, M., Yarbuh, I., Spelz, R., Negrete-Aranda, R., Contreras, J., Fletcher, J., et al. (2024). Strain localization instabilities and the genesis of multiple axes of seafloor spreading in the Carmen basin, southern Gulf of California. International Journal of Earth Sciences, doi: 10.1007/s00531-024-02426-6. [This article has been published as OPEN ACCESS, with support from SOI]

  • Kubik, B., and Holden, J. (2024). Non-thermodynamic factors affect competition between thermophilic chemolithoautotrophs from deep-sea hydrothermal vents. Applied and Env. Microbiology, doi: 10.1128/aem.00292-24. [This article has been published as OPEN ACCESS].

  • Reolid, J., Bialik, O.M., Lindhorst, S., Eisermann, J.O., Petrovic, A., Hincke, C., Beaman, R.J., Webster, J.M., Betzler, C. (2024). A new type of Halimeda bioherm on the Queensland Plateau, NE Australia. Coral Reefs, 1-21. doi: 10.1007/s00338-024-02500-0. [This article has been published OPEN ACCESS].

  • Villalobos-Guerrero, T., Huč, S., Tilic, E., Hiley, A., Rouse, G. (2024). A remarkable new deep-sea nereidid (Annelida: Nereididae) with gills. PLoS ONE, 19(3), doi: 10.1371/journal.pone.0297961. [This article has been published as OPEN ACCESS with support from SOI].

  • 2023

  • Breusing, C., Xiao, Y., Russel, S., Corbett-Detig, R., Li, S., Sun, J., et al. (2023). Ecological differences among hydrothermal vent symbioses may drive contrasting patterns of symbiont population differentiation. mSystems 8(4), doi: 10.1128/msystems.00284-23.  [This article has been published as OPEN ACCESS].

  • Carmignani, A., Radice, V., McMahon, K., Holman, A., Miller, K., Grice, K., and Richards, Z. (2023). Levels of autrophy and heterotrophy in mesophotic corals near the end photic zone. Frontiers in Marine Science, 10, doi: 10.3389/fmars.2023.1089746. [This article has been published as OPEN ACCESS, with support from SOI].

  • Chen, C., Jamieson, J., and Tunnicliffe, V. (2023). Hydrothermal vent fauna of the Galapagos Rift: Updated species list with new records. BioRxiv, preprint, doi: 10.1101/2023.11.28.568903. [This preprint article has been published as OPEN ACCESS].

  • Ekins, M., and Hooper, J. (2023). New carnivorous sponges from the Great Barrier Reef, Queensland, Australia collected by ROV from the RV FALKOR. Zootaxa, doi: 10.11646/zootaxa.5293.3.2.

  • Estapa, M., Durkin, C., Slade, W., Huffard, C., O’Neill, S., and Omand, M. (2023). A new, global optical sediment trap calibration. LImnol. Oceanogr. Methods. doi: 10.1002/lom3.10592. [This article has been published OPEN ACCESS].

  • Frable, B., Seid, C., Bronson, A., and Rask Moller, P. (2023). A new deep-sea eelpout of the genus Pyrolycus (Teleostei: Zoarcidae) associated with a hydrothermal seep on the Pacific margin of Costa Rica. Zootaxa 5230 (1), doi: 10.11646/zootaxa.5230.1.5. [This article is published as OPEN ACCESS].

  • Huang, Z., Feng, M., Dalton, S., and Carroll, A. (2023). Marine heatwaves in the Great Barrier Reef and Coral Sea: their mechanisms and impacts on shallow and mesophotic coral ecosystems. Sci. of the Total Env. (908), doi: 10.1016/j.scitotenv.2023.168063. [This article has been published as OPEN ACCESS].

  • Kennedy, R. and Rotjan, R. (2023). Mind the gap: comparing exploration effort with global biodiversity patterns and climate projects to determine ocean areas with greatest exploration needs. Front. Mar. Sci. (10). doi: 10.3389/fmars.2023.1219799. [This article has been published as OPEN ACCESS].

  • Klymak, J., Allen, S., and Waterman, S. (2023). Separation of an Upwelling Current Bounding the Juan de Fuca Eddy. JGR Oceans, 128 (8), doi: 10.1029/2023JC019688. [This article has been published OPEN ACCESS].

  • Laso-Pérez, R., Wu, F., Crémière, A., Speth, D., Magyar, J., Zhao, K., et al. (2023). Evolutionary diversification of methanotrophic ANME-1 archaea and their expansive virome. Nature Microbiology, doi: 10.1038/s41564-022-01297-4. [This article has been published as OPEN ACCESS].

  • Matek, A., Bosak, S., Supraha, L., Neeley, A., Visic, H., Cetinic, I. and Ljubesic, Z. (2023). Phytoplankton diversity and chemotaxonomy in contrasting North Pacific ecoystems. PeerJ 11, doi: 10.7717/peerj.14501. [This article has been published as OPEN ACCESS].

  • McCowin, M., Collins, P., and Rouse, G. (2023). Updated phylogeny of Vestimentifera (Siboglinidae, Polychaeta, Annelida) based on mitochondrial genomes, with a new species. Molecular Phylogenetics and Evolution, 187. doi: 10.1016/j.ympev.2023.107872. [This article has been published as OPEN ACCESS].

  • Moggioli, G., Panossian, B., Sun, Y., Thiel, D., Martin-Zamora, F., Tran, M., et al. (2023). Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelida worms. Nature Communications, 14 (2814), doi: s41469-023-38521-6. [This article is published as OPEN ACCES.]

  • Mongiardino Koch, N., Tilic, E., Miller, A.K., Stiller, J., and Rouse, G. (2023). Confusion will be my epitaph: genome-scale discordance stifles phylogenetic resolution of Holothuroidea. Proceedings of the Royal Society, 290, doi: 10.1098/rspb.2023.0988. [This article has been published as OPEN ACCESS].

  • Peña-Montenegro, T., Kleindienst, S., Allen, A., Murat Eren, A., McCrow, J., Sánchez-Calderón, J., et al. (2023). Species-specific responses of marine bacteria to envrionmental perturbation. ISME Communications, 3 (99). doi: 10.1038/s43705-023-00310-z. [The article has been published OPEN ACCESS with support from SOI].

  • Rodriguez-Flores, P., Seid, C., Rouse, G., and Giribet, G. (2023). Cosmopolitan abyssal lineages? A systematic study of East Pacific deep-sea squat lobsters (Decapoda: Galatheoidea Munidopsidae). Invertebrate Systematics, 37 (1), doi: 10.1071/IS22030. [This article has been published as OPEN ACCESS].

  • Schwarzhans, W., and Gerringer, M. (2023). Otoliths of the deepest-living fishes. Deep Sea Research Part I: Oceanographic Research Papers, 198, doi: 10.1016/j.dsr.2023.104079.

  • Stewart, A., Pietsch, T., Moore, J., Peng, X. (2023). Upside-down swimming: in situ observations of inverted orientation of Gigantiactis, with a new depth record for the Ceratioidei. Journal of Fish Biology, doi: 10.1111/jfb.15609.

  • Taviani, M., Foglini, F., Castellan, G., Montagna, P., McCulloch, M., and Trotter, J. (2023). First assessment of anthropogenic impacts in submarine canyon systems off southwestern Australia. Science of the Total Environment, 857 (1), doi: 10.1016/j.scitotenv.2022.159243. [This article has been published as OPEN ACCESS with support from SOI].

  • Wickstein, M. and Conway, K. (2023). The Chirostyloidea of the Northeastern Pacific: Host Associations, Range Extensions and a New Species (Decapoda: Anomura). Zootaxa, 5284 (1), doi:10.11646/zootaxa.5284.1.7.

  • Zhang, D., Zhou, Y., Yen, N., Hiley, A., and Rouse, G. (2023). Ophryotrocha (Dorvilleidae, Polychaeta, Annelida) from deep-sea hydrothermal vents, with the description of five new species, Euoropean Journal of Taxonomy, 864 (1), doi: 10.5852/ejt.2023.864.2101. [This article has been published as OPEN ACCESS].

  • 2022

  • Blanton, J., Peoples, L., Gerringer, M., Iacuaniello, C., Gallo, N., Linley, T., et al. (2022). Microbiomes of Hadal Fishes across Trench Habitats Contain Similar Taxa and Known Piezophiles. mSphere, 7(2), doi: 10.1128/msphere.00032-22.  [This article is published as OPEN ACCESS].

  • Breusing, C., Castel, J., Yang, Y., Broquet, T., Sun, J., Jollivet, D., et al. (2022). Global 16S rRNA Diversity of Provannid Snail Endosymbionts from Indo-Pacific Deep-sea Hydrothermal Vents. Environmental Microbiology Reports, doi: 10.1111/1758-229.13051. [This article has been published as OPEN ACCESS with support from SOI].

  • Breusing, C., Genetti, M., Russel, S., Corbett-Detig, R., and Beinart, R. (2022). Horizontal Transmission Enables Flexible Associations with Locally Adapted Symbiont Straints in Deep-sea Hydrothermal Vent Symbioses, PNAS, 119 (14), doi: 10.1073/pnas.2115608119. [This article will be available OPEN ACCESS on June 1, 2022 with support from SOI].

  • Cinay, T., Dumit, D., Woosley, R., Boles, E., Kwiecinski, J., Mullen, S., et al. (2022). Coincident Biogenic Nitrate and pH Maxima Arise in the Upper Anoxic Layer in the Eastern Tropical North Pacific. Global Biogeochemical Cycles, doi: 10.1029/2022GB007470. [This article has been published as OPEN ACCESS].

  • Durkin, C., Cetinić, I., Estapa, M., Ljubešić, Z., Mucko, J., Neeley, A., and Omand, M. (2022).  Tracing the Path of Carbon Export in the Ocean Through DNA Sequencing of Individual Sinking Particles, The ISME Journal, doi: 10.1038/s41396-022-01239-2. [This article has been published as OPEN ACCESS].

  • Etnoyer, P., Messing, C., Stanley, K., Baumiller, T., Lavelle, K., and Shirley, T. (2022). Diversity and Time-series Analyses of Caribbean deep-sea Coral and Sponge Assemblages on the Tropical Island Slope of Isla de Roatan, Honduras. Marine Biodiversity, 52(8), doi: 10.1007/s12526-021-01255-z. [This article has been published as OPEN ACCESS with support from SOI].

  • Holland, N., Hiley, A., and Rouse, G. (2022). A new species of deep-sea torquaratorid enteropneust (Hemichordata): A sequential hermaphrodite with exceptionally wide lips. Invertebrate Biology, doi: 10.111/ivb.12379. [This article is published as OPEN ACCESS with support from SOI].

  • Hu, S., Smith, A., Anderson, R., Sylva, S., Setzer, M., Steadmon, M., et al. (2022). Globally-distributed Microbial Eukaryotes Exhibit Endemism at Deep-sea Hydrothermal vents. Molecular Ecology, doi: 10.1111/med.16745.

  • Przeslawski, R. (2022). Broad distribution of spider-shaped lebensspuren along the Australian continental margin. Frontiers in Marine Science, doi: 10.3389/fmars.2022.1086193. [This article is published as OPEN ACCESS].

  • Przeslawski, R., Christenhusz, M. (2022). Deep-sea Discoveries. Zoological Journal of the Linnean Society, 194 (4), doi: 10.1093/zoolinnean/zlac022. [This article has been published as OPEN ACCESS.]

  • Ramirez-Zerpa, N., Spelz, R., Yarbuh, I., Negrete-Aranda, R., Contreras, J., Clague, D., et al. (2022). Architechture and Tectonostratigraphic Evolution of the Pescadero Basin Complex, Southern Gulf of California: Analysis of High-resolution Bathymetry and Seismic Reflection Profiles, Journal of South American Earth Sciences, 114, doi: 10.1016/j.jsames.2021.103678.

  • Sagorny, C., von Dohren, J., Rouse, G., and Tilic, E. (2022). Cutting the ribbon: bathyal Nemertea from seeps along the Costa Rica margin, with descriptions of 2 new genera and 9 new species. European Journal of Taxonomy, doi: 10.5852/ejt.2022.845.1959.  [This article has been published as OPEN ACCESS].

  • Saunders, J., McIlvin, M., Dupont, C., Kaul, D., Moran, D., Horner, T., et. al. (2022). Microbial Functional Diversity Across Biogeochemical Provinces in the central Pacific Ocean. PNAS, 119 (37), doi: 10.1073/pnas.2200014119.  [This article has been published as OPEN ACCESS].

  • She, M., Weiß, T., Song, Y., Urban, P., Greinert, J., and Köser, K. (2022). Marine Bubble Flow Quantification using Wide-baseline Stereo Photogrammetry. ISPRS Journal of Photogrammetry and Remote Sensing, 190, doi: 10.1016/j.isprsjprs.2022.06.014. [This article has been published OPEN ACCESS].

  • Speed, C., Wilson, N., Somaweera, R., Udyawer, V., Meekan, M., Whisson, C., and Miller, K. (2022). Video surveys of sea snakes in the mesophotic zone shed light on trends in populations. Front. Mar. Sci., doi: 10.3389/fmars.2022.921542. [This article has been published Open Access with support from SOI].

  • Thoram, S., Sager, W., Reed, W., Nakanishi, M., and Zhang, J. (2022). Improved High-Resolution Bathymetry Map of Tamu Massif and Southern Shatsky Rise and its Geological Implications. JGR Solid Earth, 127 (11), doi: 10.1029/2022JB04304.  [This article has been published as OPEN ACCESS].

  • Trotter, J., McCulloch, M., D’Olivo, J., Tisnérat-Laborde, N., Taviani, M., and Montagna, P. (2022).  Deep-water Coral Records of Glacial and Recent Ocean-atmosphere Dynamics from the Perth Canyon in the Southeast Indian Ocean. Quaternary Science Advances, 6, doi: 10.1016/j.qsa.2022.100052. [This articel has been published OPEN ACCESS].

  • Trotter, J., Taviani, M., Foglini, F., Sadekov, A., Skrzypek, G., Mazzoli, C., et al. (2022). Unveiling Deep-sea Habitats of the Southern Ocean-facing Submarine Canyons of Southwestern Australia. Progress in Oceanography, 209, doi: 10.1016/j.pocean.2022.102904. [This article has been published as OPEN ACCESS with support from SOI].

  • Yamada, T., Massot-Campus, M., Prugel-Bennett, A., Pizarro, O., Williams, S., and Thornton, B. (2022). Guiding Labelling Effort for Efficient Learning with Georeferenced Images, IEEE Transactions on Pattern Analysis and Machine Learning, doi: 10.1109/TPAMI.2021.3140060. (Early Access). [This article is published as OPEN ACCESS with support from SOI].

  • 2021

  • Anderson, M., Norris-Julseth, C., Rubin, K., Haase, K., Hannington, M., Baxter, A., and Stewart, M. (2021). Geologic and Structural Evolution of the NE Lau Basin, Tonga: Morphotectonic Analysis and Classification of Structures Using Shallow Seismicity. Frontiers in Earth Science, 9:665185, doi: 10.3389/feart.2021.665185.[This article was published as OPEN ACCESS with support from SOI]. 

  • Breusing, C., Johnson, S., Mitarai, S., Beinart, R. and Tunnicliffe, V. (2021). Differential Patterns of Connectivity in Western Pacific Hydrothermal Vent Metapopulations: A Comparison of Biophysical and Genetic Models. Evolutionary Applications, 00, 1-14, doi: 10.1111/eva.13326. [This article has been published as OPEN ACCESS].