Investigating Life without Oxygen in the Tropical Pacific

Sea Change

Established, natural ODZs are relatively low in dissolved oxygen due to factors like local temperature and how much mixing occurs between the upper and subsurface ocean layers. People are now contributing to the expansion of non-natural ODZs in two main ways: on a smaller scale in estuaries and coastal environments through fertilizer pollution (which results in highly harmful “dead zones”), and on a larger scale through greenhouse gas emissions that result in climate change. As ocean temperatures warm, the water holds less oxygen. At the same time, warmer temperatures increase microbial populations’ overall respiration; the combination of these two effects result in widespread oxygen depletion. Research suggests that ODZs have already expanded in tropical ocean basins and in the subarctic Pacific. This expansion of oxygen deficient zones could compress the available habitat for larger marine species and change the global ocean’s biogeochemical balance.

Biogeochemistry: The Foundation for Life

Most of us are acquainted with the biogeochemical process of photosynthesis, the uptake of carbon and production of oxygen that is vital for life on Earth. However, there are many other biogeochemical processes of similar importance – and the biogeochemical reactions that take place in ODZs are quite different from the ones where photosynthetic microbes are dominant. With little oxygen available, microbial life within these zones must generate energy from nitrogen instead. This means that microbiota that live within ODZs are responsible for the biogeochemical reactions that are critical for the cycling of nitrogen, a necessary element for all marine life in the global ocean. These reactions include the cycling of ammonia and nitrite, the oxidation of urea, as well as the denitrifying reactions that remove fixed nitrogen from the oceans – a process that, if left incomplete, produces the potent greenhouse gas (N2O).

In addition to nitrogen, the scientists on this expedition were interested in analyzing the biogeochemistry of mercury – a toxic metal that humans are primarily exposed to through eating fish. Mercury cycling is not well understood, however, researchers believe that important parts of the process occur in in low-oxygen waters, and thus think the expansion of ODZs could eventually result in increased mercury levels in our seafood.

Proteomics: A New Methodology

The science party also investigated the biogeochemistry of ODZs using a variety of well-established tactics that include chemical and biological measurements. One of the most interesting strategies used is proteomics, the study of protein structures and functions. Proteomics are not regularly used in marine biogeochemistry, but the scientists think they are a helpful way to directly measure the microbial enzymes involved in biogeochemical reactions. The use of proteomics in conjunction with chemical measurements allows researchers to better connect the biological and chemical components of the elemental cycles. By employing this relatively new methodology, the team could better understand the biogeochemical processes of ODZs, and laid down the groundwork for others to apply proteomics to biogeochemical processes elsewhere.

Our oceans are changing and, in order to anticipate the marine biogeochemical processes that will take place in the future, we need to understand the ones that are taking place now. The goal of this cruise was to provide that needed snapshot of life in oxygen deficient zones and test a new method that can provide a model for future research.

Research activities for this expedition were funded by the Gordon and Betty Moore Foundation, the Sloan Foundation, and the National Science Foundation

by Samantha Larson